IL_4WSM_182
3D structure
- PDB id
- 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSM_182 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0739
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WSM|1|16|C|71
4WSM|1|16|G|72
4WSM|1|16|A|73
4WSM|1|16|U|74
4WSM|1|16|G|75
4WSM|1|16|G|76
4WSM|1|16|U|77
4WSM|1|16|A|78
4WSM|1|16|C|79
*
4WSM|1|16|G|97
4WSM|1|16|G|98
4WSM|1|16|A|99
4WSM|1|16|G|100
4WSM|1|16|A|101
4WSM|1|16|G|102
4WSM|1|16|U|103
4WSM|1|16|A|104
4WSM|1|16|G|105
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
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