IL_4WSM_201

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_201 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.151

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WSM|1|1G|G|409
4WSM|1|1G|G|410
4WSM|1|1G|A|411
4WSM|1|1G|A|412
4WSM|1|1G|G|413
4WSM|1|1G|A|414
4WSM|1|1G|A|415
4WSM|1|1G|G|416
*
4WSM|1|1G|U|427
4WSM|1|1G|G|428
4WSM|1|1G|U|429
4WSM|1|1G|A|430
4WSM|1|1G|A|431
4WSM|1|1G|A|432
4WSM|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12