IL_4WSM_219

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

4WSM|1|1G|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_219 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2406

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4WSM|1|1G|G|922
4WSM|1|1G|A|923
4WSM|1|1G|C|924
*
4WSM|1|1G|G|1392
4WSM|1|1G|U|1393
4WSM|1|1G|A|1394
4WSM|1|1G|C|1395

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 42

30S ribosomal protein S5

Chain 4L

mRNA