IL_4WSM_276

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4WSM|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_276 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2759

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4WSM|1|1H|C|844
4WSM|1|1H|G|845
4WSM|1|1H|C|846
*
4WSM|1|1H|G|931
4WSM|1|1H|G|932
4WSM|1|1H|A|933
4WSM|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30