IL_4WSM_282

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_282 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3953

The information below is about IL_1U6B_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WSM|1|1H|G|875
4WSM|1|1H|C|876
4WSM|1|1H|U|877
4WSM|1|1H|A|878
4WSM|1|1H|G|879
*
4WSM|1|1H|C|898
4WSM|1|1H|A|899
4WSM|1|1H|A|900
4WSM|1|1H|A|901
4WSM|1|1H|C|902

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16

Chain H8

50S ribosomal protein L25