IL_4WSM_337

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WSM|1|1H|C|2111, 4WSM|1|1H|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_337 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.3154

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WSM|1|1H|G|2110
4WSM|1|1H|C|2111
4WSM|1|1H|G|2112
4WSM|1|1H|U|2113
4WSM|1|1H|A|2114
4WSM|1|1H|G|2115
4WSM|1|1H|G|2116
4WSM|1|1H|A|2117
4WSM|1|1H|U|2118
4WSM|1|1H|A|2119
4WSM|1|1H|G|2120
*
4WSM|1|1H|C|2178
4WSM|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA