IL_4WSM_339

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4WSM|1|1H|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_339 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4562

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4WSM|1|1H|C|2129
4WSM|1|1H|U|2130
4WSM|1|1H|G|2131
4WSM|1|1H|U|2132
4WSM|1|1H|G|2133
4WSM|1|1H|A|2134
4WSM|1|1H|A|2135
4WSM|1|1H|C|2136
*
4WSM|1|1H|G|2155
4WSM|1|1H|G|2156
4WSM|1|1H|G|2157
4WSM|1|1H|A|2158
4WSM|1|1H|G|2159

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains