IL_4WSM_345

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_345 not in the Motif Atlas

Geometric match to IL_7RQB_091

Geometric discrepancy: 0.1039

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

4WSM|1|1H|A|2453
4WSM|1|1H|G|2454
*
4WSM|1|1H|C|2498
4WSM|1|1H|C|2499
4WSM|1|1H|U|2500

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 21

50S ribosomal protein L3

Chain I8

50S ribosomal protein L27