IL_4WSM_351

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4WSM|1|1H|G|2576, 4WSM|1|1H|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_351 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0701

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4WSM|1|1H|C|2510
4WSM|1|1H|U|2511
4WSM|1|1H|C|2512
*
4WSM|1|1H|G|2574
4WSM|1|1H|C|2575
4WSM|1|1H|G|2576
4WSM|1|1H|A|2577
4WSM|1|1H|G|2578

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 21

50S ribosomal protein L3

Chain N8

50S ribosomal protein L32