IL_4WSM_397

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGGAGCCUGUGAACC*GGGAGGCGCCGGUGAAAUACCAC

Length

40 nucleotides

Bulged bases

4WSM|1|14|G|2125, 4WSM|1|14|A|2126, 4WSM|1|14|G|2131, 4WSM|1|14|U|2132, 4WSM|1|14|A|2158, 4WSM|1|14|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSM|1|14|G|2121
4WSM|1|14|U|2122
4WSM|1|14|G|2123
4WSM|1|14|G|2124
4WSM|1|14|G|2125
4WSM|1|14|A|2126
4WSM|1|14|G|2127
4WSM|1|14|C|2128
4WSM|1|14|C|2129
4WSM|1|14|U|2130
4WSM|1|14|G|2131
4WSM|1|14|U|2132
4WSM|1|14|G|2133
4WSM|1|14|A|2134
4WSM|1|14|A|2135
4WSM|1|14|C|2136
4WSM|1|14|C|2137
*
4WSM|1|14|G|2155
4WSM|1|14|G|2156
4WSM|1|14|G|2157
4WSM|1|14|A|2158
4WSM|1|14|G|2159
4WSM|1|14|G|2160
4WSM|1|14|C|2161
4WSM|1|14|G|2162
4WSM|1|14|C|2163
4WSM|1|14|C|2164
4WSM|1|14|G|2165
4WSM|1|14|G|2166
4WSM|1|14|U|2167
4WSM|1|14|G|2168
4WSM|1|14|A|2169
4WSM|1|14|A|2170
4WSM|1|14|A|2171
4WSM|1|14|U|2172
4WSM|1|14|A|2173
4WSM|1|14|C|2174
4WSM|1|14|C|2175
4WSM|1|14|A|2176
4WSM|1|14|C|2177

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA