3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GACAACC*GGCUAAUC
Length
15 nucleotides
Bulged bases
4WT1|1|13|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT1_011 not in the Motif Atlas
Homologous match to IL_6CZR_121
Geometric discrepancy: 0.2197
The information below is about IL_6CZR_121
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.5
Basepair signature
cWW-L-R-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

4WT1|1|13|G|148
4WT1|1|13|A|149
4WT1|1|13|C|150
4WT1|1|13|A|151
4WT1|1|13|A|152
4WT1|1|13|C|153
4WT1|1|13|C|154
*
4WT1|1|13|G|167
4WT1|1|13|G|168
4WT1|1|13|C|169
4WT1|1|13|U|170
4WT1|1|13|A|171
4WT1|1|13|A|172
4WT1|1|13|U|173
4WT1|1|13|C|174

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain BI
30S ribosomal protein S20

Coloring options:


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