IL_4WT1_033

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_033 not in the Motif Atlas

Homologous match to IL_5J7L_031

Geometric discrepancy: 0.143

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4WT1|1|13|G|654
4WT1|1|13|A|655
*
4WT1|1|13|U|751
4WT1|1|13|G|752
4WT1|1|13|A|753
4WT1|1|13|C|754

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 6I

30S ribosomal protein S15

Chain 7E

30S ribosomal protein S8