IL_4WT1_071

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_071 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0618

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WT1|1|14|G|24
4WT1|1|14|U|25
4WT1|1|14|G|26
4WT1|1|14|G|27
4WT1|1|14|A|28
4WT1|1|14|U|29
4WT1|1|14|G|30
*
4WT1|1|14|C|510
4WT1|1|14|U|511
4WT1|1|14|G|512
4WT1|1|14|A|513
4WT1|1|14|A|514
4WT1|1|14|A|515
4WT1|1|14|C|516

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32