IL_4WT1_090

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WT1|1|14|G|801, 4WT1|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_090 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0918

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WT1|1|14|G|674
4WT1|1|14|A|675
4WT1|1|14|A|676
4WT1|1|14|A|677
4WT1|1|14|C|678
*
4WT1|1|14|G|799
4WT1|1|14|A|800
4WT1|1|14|G|801
4WT1|1|14|A|802
4WT1|1|14|U|803
4WT1|1|14|A|804
4WT1|1|14|G|805
4WT1|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4