3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CUG*UUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT1_153 not in the Motif Atlas
Homologous match to IL_7RQB_083
Geometric discrepancy: 0.0733
The information below is about IL_7RQB_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
270

Unit IDs

4WT1|1|14|C|2085
4WT1|1|14|U|2086
4WT1|1|14|G|2087
*
4WT1|1|14|U|2232
4WT1|1|14|U|2233
4WT1|1|14|G|2234

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 3L
Transfer RNA; tRNA
Chain F5
50S ribosomal protein L28

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