IL_4WT1_158

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

4WT1|1|14|C|2111, 4WT1|1|14|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_158 not in the Motif Atlas

Geometric match to IL_7Y2B_002

Geometric discrepancy: 0.2792

The information below is about IL_7Y2B_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4WT1|1|14|G|2110
4WT1|1|14|C|2111
4WT1|1|14|G|2112
4WT1|1|14|U|2113
4WT1|1|14|A|2114
4WT1|1|14|G|2115
4WT1|1|14|G|2116
4WT1|1|14|A|2117
4WT1|1|14|U|2118
4WT1|1|14|A|2119
4WT1|1|14|G|2120
4WT1|1|14|G|2121
*
4WT1|1|14|C|2177
4WT1|1|14|C|2178
4WT1|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA