IL_4WT1_163

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_163 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1073

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4WT1|1|14|C|2350
4WT1|1|14|G|2351
4WT1|1|14|A|2352
4WT1|1|14|G|2353
*
4WT1|1|14|C|2364
4WT1|1|14|G|2365
4WT1|1|14|A|2366
4WT1|1|14|G|2367

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain E5

50S ribosomal protein L27

Chain M5

50S ribosomal protein L35