IL_4WT1_239

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

4WT1|1|1G|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_239 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.2582

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WT1|1|1G|G|1047
4WT1|1|1G|G|1048
4WT1|1|1G|U|1049
4WT1|1|1G|G|1050
*
4WT1|1|1G|C|1208
4WT1|1|1G|C|1209
4WT1|1|1G|C|1210

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z