3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GCCAC*GGAGC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT1_254 not in the Motif Atlas
Geometric match to IL_7A0S_056
Geometric discrepancy: 0.3933
The information below is about IL_7A0S_056
Detailed Annotation
Double sheared with near cWW
Broad Annotation
Double sheared
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

4WT1|1|1G|G|1258
4WT1|1|1G|C|1259
4WT1|1|1G|C|1260
4WT1|1|1G|A|1261
4WT1|1|1G|C|1262
*
4WT1|1|1G|G|1273
4WT1|1|1G|G|1274
4WT1|1|1G|A|1275
4WT1|1|1G|G|1276
4WT1|1|1G|C|1277

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1B
30S ribosomal protein Thx
Chain 22
30S ribosomal protein S3
Chain 5A
30S ribosomal protein S14 type Z

Coloring options:


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