IL_4WT1_303

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_303 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.0765

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4WT1|1|1H|C|1004
4WT1|1|1H|C|1005
4WT1|1|1H|C|1006
4WT1|1|1H|C|1007
4WT1|1|1H|C|1008
4WT1|1|1H|A|1009
4WT1|1|1H|A|1010
4WT1|1|1H|G|1011
*
4WT1|1|1H|C|1150
4WT1|1|1H|G|1151

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 58

50S ribosomal protein L13

Chain C8

50S ribosomal protein L20