IL_4WT1_310

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_310 not in the Motif Atlas

Geometric match to IL_3R1C_031

Geometric discrepancy: 0.225

The information below is about IL_3R1C_031

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

4WT1|1|1H|C|1053
4WT1|1|1H|A|1054
4WT1|1|1H|G|1055
*
4WT1|1|1H|C|1104
4WT1|1|1H|U|1105
4WT1|1|1H|G|1106

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains