IL_4WT1_313

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4WT1|1|1H|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_313 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0844

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4WT1|1|1H|C|1196
4WT1|1|1H|G|1197
4WT1|1|1H|U|1198
*
4WT1|1|1H|A|1247
4WT1|1|1H|G|1248
4WT1|1|1H|U|1249
4WT1|1|1H|G|1250

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain C8

50S ribosomal protein L20