3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
4WT1|1|1H|U|2132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT1_357 not in the Motif Atlas
Homologous match to IL_5J7L_330
Geometric discrepancy: 0.4476
The information below is about IL_5J7L_330
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

4WT1|1|1H|C|2129
4WT1|1|1H|U|2130
4WT1|1|1H|G|2131
4WT1|1|1H|U|2132
4WT1|1|1H|G|2133
4WT1|1|1H|A|2134
4WT1|1|1H|A|2135
4WT1|1|1H|C|2136
*
4WT1|1|1H|G|2155
4WT1|1|1H|G|2156
4WT1|1|1H|G|2157
4WT1|1|1H|A|2158
4WT1|1|1H|G|2159

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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