IL_4WT1_359

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCCGCC*GGUGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_359 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3757

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4WT1|1|1H|C|2138
4WT1|1|1H|C|2139
4WT1|1|1H|C|2140
4WT1|1|1H|G|2141
4WT1|1|1H|C|2142
4WT1|1|1H|C|2143
*
4WT1|1|1H|G|2148
4WT1|1|1H|G|2149
4WT1|1|1H|U|2150
4WT1|1|1H|G|2151
4WT1|1|1H|G|2152
4WT1|1|1H|G|2153

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11