IL_4WT1_380

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_380 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.0883

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4WT1|1|1H|G|2843
4WT1|1|1H|G|2844
4WT1|1|1H|G|2845
4WT1|1|1H|G|2846
*
4WT1|1|1H|C|2870
4WT1|1|1H|C|2871
4WT1|1|1H|G|2872
4WT1|1|1H|A|2873
4WT1|1|1H|C|2874

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19