IL_4WT1_394

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAACCCC*GGGACUGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_394 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.1812

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT1|1|13|G|450
4WT1|1|13|A|451
4WT1|1|13|A|452
4WT1|1|13|A|453
4WT1|1|13|C|454
4WT1|1|13|C|455
4WT1|1|13|C|456
4WT1|1|13|C|457
*
4WT1|1|13|G|475
4WT1|1|13|G|476
4WT1|1|13|G|477
4WT1|1|13|A|478
4WT1|1|13|C|479
4WT1|1|13|U|480
4WT1|1|13|G|481
4WT1|1|13|A|482
4WT1|1|13|C|483

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16