IL_4WT1_406

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_406 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3087

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WT1|1|14|G|1856
4WT1|1|14|G|1857
4WT1|1|14|G|1858
4WT1|1|14|A|1859
4WT1|1|14|G|1860
4WT1|1|14|G|1861
*
4WT1|1|14|C|1881
4WT1|1|14|C|1882
4WT1|1|14|G|1883
4WT1|1|14|A|1884
4WT1|1|14|A|1885
4WT1|1|14|C|1886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain F5

50S ribosomal protein L28