IL_4WT1_407

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGCGUAGGAUAGGUGGGAG*CGCCGGUGAAAUACCACCCUG

Length

41 nucleotides

Bulged bases

4WT1|1|14|C|2111, 4WT1|1|14|U|2113, 4WT1|1|14|A|2126, 4WT1|1|14|G|2166, 4WT1|1|14|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT1|1|14|C|2108
4WT1|1|14|U|2109
4WT1|1|14|G|2110
4WT1|1|14|C|2111
4WT1|1|14|G|2112
4WT1|1|14|U|2113
4WT1|1|14|A|2114
4WT1|1|14|G|2115
4WT1|1|14|G|2116
4WT1|1|14|A|2117
4WT1|1|14|U|2118
4WT1|1|14|A|2119
4WT1|1|14|G|2120
4WT1|1|14|G|2121
4WT1|1|14|U|2122
4WT1|1|14|G|2123
4WT1|1|14|G|2124
4WT1|1|14|G|2125
4WT1|1|14|A|2126
4WT1|1|14|G|2127
*
4WT1|1|14|C|2161
4WT1|1|14|G|2162
4WT1|1|14|C|2163
4WT1|1|14|C|2164
4WT1|1|14|G|2165
4WT1|1|14|G|2166
4WT1|1|14|U|2167
4WT1|1|14|G|2168
4WT1|1|14|A|2169
4WT1|1|14|A|2170
4WT1|1|14|A|2171
4WT1|1|14|U|2172
4WT1|1|14|A|2173
4WT1|1|14|C|2174
4WT1|1|14|C|2175
4WT1|1|14|A|2176
4WT1|1|14|C|2177
4WT1|1|14|C|2178
4WT1|1|14|C|2179
4WT1|1|14|U|2180
4WT1|1|14|G|2181

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA