IL_4WT1_424

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_424 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0587

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4WT1|1|1H|G|1666
4WT1|1|1H|G|1667
4WT1|1|1H|A|1668
4WT1|1|1H|A|1669
4WT1|1|1H|C|1670
4WT1|1|1H|U|1671
4WT1|1|1H|C|1672
4WT1|1|1H|U|1673
4WT1|1|1H|G|1674
*
4WT1|1|1H|C|1990
4WT1|1|1H|U|1991
4WT1|1|1H|G|1992
4WT1|1|1H|U|1993
4WT1|1|1H|C|1994

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14