IL_4WT1_434

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_434 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.1274

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

4WT1|1|16|C|30
4WT1|1|16|C|31
*
4WT1|1|16|G|51
4WT1|1|16|A|52
4WT1|1|16|A|53
4WT1|1|16|G|54

Current chains

Chain 16

5S ribosomal RNA

Nearby chains

Chain 41

50S ribosomal protein L5

Chain A8

50S ribosomal protein L18