IL_4WT1_438

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4WT1|1|1G|U|1257, 4WT1|1|1G|C|1260, 4WT1|1|1G|A|1280, 4WT1|1|1G|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT1|1|1G|G|1255
4WT1|1|1G|A|1256
4WT1|1|1G|U|1257
4WT1|1|1G|G|1258
4WT1|1|1G|C|1259
4WT1|1|1G|C|1260
4WT1|1|1G|A|1261
4WT1|1|1G|C|1262
*
4WT1|1|1G|G|1273
4WT1|1|1G|G|1274
4WT1|1|1G|A|1275
4WT1|1|1G|G|1276
4WT1|1|1G|C|1277
4WT1|1|1G|U|1278
4WT1|1|1G|A|1279
4WT1|1|1G|A|1280
4WT1|1|1G|U|1281
4WT1|1|1G|C|1282

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1B

30S ribosomal protein Thx

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z