IL_4WU1_020

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1312

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WU1|1|13|G|409
4WU1|1|13|G|410
4WU1|1|13|A|411
4WU1|1|13|A|412
4WU1|1|13|G|413
4WU1|1|13|A|414
4WU1|1|13|A|415
4WU1|1|13|G|416
*
4WU1|1|13|U|427
4WU1|1|13|G|428
4WU1|1|13|U|429
4WU1|1|13|A|430
4WU1|1|13|A|431
4WU1|1|13|A|432
4WU1|1|13|C|433

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4