3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WU1_230 not in the Motif Atlas
Geometric match to IL_2D6F_001
Geometric discrepancy: 0.2811
The information below is about IL_2D6F_001
Detailed Annotation
Self complementary
Broad Annotation
Self complementary
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4WU1|1|1G|C|1008
4WU1|1|1G|G|1009
4WU1|1|1G|G|1010
*
4WU1|1|1G|C|1019
4WU1|1|1G|U|1020
4WU1|1|1G|G|1021

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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