IL_4WU1_261

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_261 not in the Motif Atlas

Geometric match to IL_3D0M_002

Geometric discrepancy: 0.1775

The information below is about IL_3D0M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4WU1|1|1H|C|270|||H
4WU1|1|1H|G|270|||I
4WU1|1|1H|G|270|||J
*
4WU1|1|1H|C|270|||P
4WU1|1|1H|C|270|||Q
4WU1|1|1H|G|270|||R

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28