3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UAG*CGAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WU1_267 not in the Motif Atlas
Homologous match to IL_7RQB_013
Geometric discrepancy: 0.0683
The information below is about IL_7RQB_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.1
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

4WU1|1|1H|U|293
4WU1|1|1H|A|294
4WU1|1|1H|G|295
*
4WU1|1|1H|C|343
4WU1|1|1H|G|344
4WU1|1|1H|A|345
4WU1|1|1H|A|346
4WU1|1|1H|A|347

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain G8
50S ribosomal protein L24

Coloring options:


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