IL_4WU1_324

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4WU1|1|1H|G|1801, 4WU1|1|1H|G|1816, 4WU1|1|1H|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_324 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0477

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4WU1|1|1H|U|1798
4WU1|1|1H|G|1799
4WU1|1|1H|C|1800
4WU1|1|1H|G|1801
4WU1|1|1H|A|1802
4WU1|1|1H|A|1803
4WU1|1|1H|C|1804
*
4WU1|1|1H|G|1813
4WU1|1|1H|G|1814
4WU1|1|1H|A|1815
4WU1|1|1H|G|1816
4WU1|1|1H|G|1817
4WU1|1|1H|U|1818
4WU1|1|1H|A|1819
4WU1|1|1H|U|1820
4WU1|1|1H|A|1821

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA