IL_4WU1_338

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_338 not in the Motif Atlas

Geometric match to IL_4M4O_002

Geometric discrepancy: 0.2039

The information below is about IL_4M4O_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4WU1|1|1H|C|2105
4WU1|1|1H|G|2106
4WU1|1|1H|C|2107
*
4WU1|1|1H|G|2182
4WU1|1|1H|C|2183
4WU1|1|1H|G|2184

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 71

50S ribosomal protein L1