IL_4WU1_364

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WU1|1|1H|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_364 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0788

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WU1|1|1H|G|2737
4WU1|1|1H|A|2738
4WU1|1|1H|U|2739
4WU1|1|1H|A|2740
4WU1|1|1H|A|2741
4WU1|1|1H|C|2742
*
4WU1|1|1H|G|2762
4WU1|1|1H|G|2763
4WU1|1|1H|A|2764
4WU1|1|1H|A|2765
4WU1|1|1H|G|2766
4WU1|1|1H|C|2767

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13