IL_4WU1_385

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_385 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.138

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WU1|1|13|C|1259
4WU1|1|13|C|1260
4WU1|1|13|A|1261
4WU1|1|13|C|1262
*
4WU1|1|13|G|1273
4WU1|1|13|G|1274
4WU1|1|13|A|1275
4WU1|1|13|G|1276

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1F

30S ribosomal protein Thx