IL_4WU1_393

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_393 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0586

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4WU1|1|14|G|1666
4WU1|1|14|G|1667
4WU1|1|14|A|1668
4WU1|1|14|A|1669
4WU1|1|14|C|1670
4WU1|1|14|U|1671
4WU1|1|14|C|1672
4WU1|1|14|U|1673
4WU1|1|14|G|1674
*
4WU1|1|14|C|1990
4WU1|1|14|U|1991
4WU1|1|14|G|1992
4WU1|1|14|U|1993
4WU1|1|14|C|1994

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3