IL_4WU1_401

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAACC*GGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_401 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2573

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WU1|1|1G|C|779
4WU1|1|1G|A|780
4WU1|1|1G|A|781
4WU1|1|1G|A|782
4WU1|1|1G|C|783
4WU1|1|1G|C|784
*
4WU1|1|1G|G|798
4WU1|1|1G|G|799
4WU1|1|1G|G|800
4WU1|1|1G|U|801
4WU1|1|1G|A|802
4WU1|1|1G|G|803

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2A

30S ribosomal protein S11