IL_4WZD_325

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WZD|1|1H|A|1938||||P_1, 4WZD|1|1H|U|1944||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZD_325 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.0763

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4WZD|1|1H|C|1934||||P_1
4WZD|1|1H|G|1935||||P_1
4WZD|1|1H|A|1936||||P_1
4WZD|1|1H|A|1937||||P_1
4WZD|1|1H|A|1938||||P_1
4WZD|1|1H|U|1939||||P_1
4WZD|1|1H|U|1940||||P_1
4WZD|1|1H|C|1941||||P_1
4WZD|1|1H|C|1942||||P_1
4WZD|1|1H|U|1943||||P_1
4WZD|1|1H|U|1944||||P_1
4WZD|1|1H|G|1945||||P_1
*
4WZD|1|1H|C|1961||||P_1
4WZD|1|1H|C|1962||||P_1
4WZD|1|1H|U|1963||||P_1
4WZD|1|1H|G|1964||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA