IL_4WZO_026

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_026 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3535

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4WZO|1|13|G|597
4WZO|1|13|U|598
4WZO|1|13|C|599
*
4WZO|1|13|G|639
4WZO|1|13|A|640
4WZO|1|13|U|641
4WZO|1|13|A|642
4WZO|1|13|C|643

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17