IL_4WZO_086

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WZO|1|14|G|801, 4WZO|1|14|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_086 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1028

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4WZO|1|14|G|674
4WZO|1|14|A|675
4WZO|1|14|A|676
4WZO|1|14|A|677
4WZO|1|14|C|678
*
4WZO|1|14|G|799
4WZO|1|14|A|800
4WZO|1|14|G|801
4WZO|1|14|A|802
4WZO|1|14|U|803
4WZO|1|14|A|804
4WZO|1|14|G|805
4WZO|1|14|C|806

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4