IL_4WZO_118

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_118 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0571

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WZO|1|14|A|1262
4WZO|1|14|U|1263
4WZO|1|14|G|1264
4WZO|1|14|A|1265
4WZO|1|14|G|1266
4WZO|1|14|U|1267
4WZO|1|14|A|1268
4WZO|1|14|A|1269
*
4WZO|1|14|U|2011
4WZO|1|14|G|2012
4WZO|1|14|A|2013
4WZO|1|14|A|2014
4WZO|1|14|A|2015
4WZO|1|14|U|2016
4WZO|1|14|U|2017

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32