IL_4WZO_425

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WZO_425 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0759

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4WZO|1|1H|G|1666
4WZO|1|1H|G|1667
4WZO|1|1H|A|1668
4WZO|1|1H|A|1669
4WZO|1|1H|C|1670
4WZO|1|1H|U|1671
4WZO|1|1H|C|1672
4WZO|1|1H|U|1673
4WZO|1|1H|G|1674
*
4WZO|1|1H|C|1990
4WZO|1|1H|U|1991
4WZO|1|1H|G|1992
4WZO|1|1H|U|1993
4WZO|1|1H|C|1994

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14