3D structure

PDB id
4X65 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4X65_027 not in the Motif Atlas
Homologous match to IL_4LFB_027
Geometric discrepancy: 0.0551
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4X65|1|A|G|654
4X65|1|A|A|655
*
4X65|1|A|U|751
4X65|1|A|G|752
4X65|1|A|A|753
4X65|1|A|C|754

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain O
30S ribosomal protein S15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0642 s