IL_4XCO_003

3D structure

PDB id

4XCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Signal-sequence induced conformational changes in the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCAGGC*GAGCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XCO_003 not in the Motif Atlas

Homologous match to IL_4XCO_006

Geometric discrepancy: 0.0635

The information below is about IL_4XCO_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22771.1

Basepair signature

cWW-cWW-L-R-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4XCO|1|E|G|200
4XCO|1|E|C|201
4XCO|1|E|C|202
4XCO|1|E|A|203
4XCO|1|E|G|204
4XCO|1|E|G|205
4XCO|1|E|C|206
*
4XCO|1|E|G|215
4XCO|1|E|A|216
4XCO|1|E|G|217
4XCO|1|E|C|218
4XCO|1|E|A|219
4XCO|1|E|A|220
4XCO|1|E|C|221

Current chains

Chain E

RNA

Nearby chains

Chain B

Signal recognition particle 19 kDa protein

Chain C

Signal recognition particle 54 kDa protein,signal sequence