IL_4XLR_005
3D structure
- PDB id
- 4XLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T.aquaticus transcription initiation complex with CarD containing bubble promoter and RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.3 Å
Loop
- Sequence
- GTTAAATTGTG*CACAATTTAAC
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4XLR|1|R|DG|13
4XLR|1|R|DT|14
4XLR|1|R|DT|15
4XLR|1|R|DA|16
4XLR|1|R|DA|17
4XLR|1|R|DA|18
4XLR|1|R|DT|19
4XLR|1|R|DT|20
4XLR|1|R|DG|21
4XLR|1|R|DT|22
4XLR|1|R|DG|23
*
4XLR|1|S|DC|26
4XLR|1|S|DA|27
4XLR|1|S|DC|28
4XLR|1|S|DA|29
4XLR|1|S|DA|30
4XLR|1|S|DT|31
4XLR|1|S|DT|32
4XLR|1|S|DT|33
4XLR|1|S|DA|34
4XLR|1|S|DA|35
4XLR|1|S|DC|36
Current chains
- Chain R
- DNA (48-MER)
- Chain S
- DNA (48-MER)
Nearby chains
- Chain J
- DNA-directed RNA polymerase subunit beta'
- Chain L
- RNA polymerase sigma factor SigA
- Chain N
- CarD-like transcriptional regulator
Coloring options: