IL_4Y1J_001

3D structure

PDB id

4Y1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.24 Å

Loop

Sequence

GGGAGUAG*CAAGAC

Length

14 nucleotides

Bulged bases

4Y1J|1|A|A|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with bulged A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02349.2

Basepair signature

cWW-tSH-tWH-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4Y1J|1|A|G|7
4Y1J|1|A|G|8
4Y1J|1|A|G|9
4Y1J|1|A|A|10
4Y1J|1|A|G|11
4Y1J|1|A|U|12
4Y1J|1|A|A|13
4Y1J|1|A|G|14
*
4Y1J|1|A|C|91
4Y1J|1|A|A|92
4Y1J|1|A|A|93
4Y1J|1|A|G|94
4Y1J|1|A|A|95
4Y1J|1|A|C|96

Current chains

Chain A

yybP-ykoY riboswitch

Nearby chains